testing grouping of shapefiles to CWL record objects

cwl/OutputToShapefiles.cwl

@@ -2,6 +2,7 @@ cwlVersion: v1.2
 class: ExpressionTool
 requirements:
 - $import: GIS.cwl
+- class: InlineJavascriptRequirement
 inputs:
   files:
     type: File[]
@@ -59,5 +60,5 @@ expression: |
         "cpg": group.cpg,
         "qpj": group.qpj
       };
-    });
+    }).filter(group => group.shp !== null);
   }

cwl/africapolis/africapolos.cwl

@@ -22,7 +22,7 @@ inputs:
     doc: "Configuration file for Africapolis workflow"
   partitions:
     type: int
-    default: 4
+    default: 1
     doc: "Number of partitions created on the input for parallel computation"
 outputs:
   vector_output:

cwl/africapolis/multiple_shapefiles.json

+{ 
+    "files":[
+    {
+        "location": "file:///home/lolo/Desktop/7fox_nxp/Corvara_IT_0_0.dbf",
+        "basename": "Corvara_IT_0_0.dbf",
+        "nameroot": "Corvara_IT_0_0",
+        "nameext": ".dbf",
+        "class": "File",
+        "checksum": "sha1$9fb6627068ed17a5f0aed1c446221bdb0bbcfd14",
+        "size": 2514,
+        "http://commonwl.org/cwltool#generation": 0
+    },
+    {
+        "location": "file:///home/lolo/Desktop/7fox_nxp/Corvara_IT_0_0.prj",
+        "basename": "Corvara_IT_0_0.prj",
+        "nameroot": "Corvara_IT_0_0",
+        "nameext": ".prj",
+        "class": "File",
+        "checksum": "sha1$86813d76269ab91b40ed3e67a86745bd933124e0",
+        "size": 145,
+        "http://commonwl.org/cwltool#generation": 0
+    },
+    {
+        "location": "file:///home/lolo/Desktop/7fox_nxp/Corvara_IT_0_0.shp",
+        "basename": "Corvara_IT_0_0.shp",
+        "nameroot": "Corvara_IT_0_0",
+        "nameext": ".shp",
+        "class": "File",
+        "checksum": "sha1$9f2c4ae6097d3487a735f14b211e3f455b85d9ed",
+        "size": 79500,
+        "http://commonwl.org/cwltool#generation": 0
+    },
+    {
+        "location": "file:///home/lolo/Desktop/7fox_nxp/Corvara_IT_0_0.shx",
+        "basename": "Corvara_IT_0_0.shx",
+        "nameroot": "Corvara_IT_0_0",
+        "nameext": ".shx",
+        "class": "File",
+        "checksum": "sha1$8fbd41e2dce33915444baef6a3c3e25543b315e4",
+        "size": 1732,
+        "http://commonwl.org/cwltool#generation": 0
+    },
+    {
+        "location": "file:///home/lolo/Desktop/7fox_nxp/Corvara_IT_0_1.dbf",
+        "basename": "Corvara_IT_0_1.dbf",
+        "nameroot": "Corvara_IT_0_1",
+        "nameext": ".dbf",
+        "class": "File",
+        "checksum": "sha1$9cec687e742cb4e083e917f2f1bfd6ade4810db6",
+        "size": 162,
+        "http://commonwl.org/cwltool#generation": 0
+    },
+    {
+        "location": "file:///home/lolo/Desktop/7fox_nxp/Corvara_IT_0_1.prj",
+        "basename": "Corvara_IT_0_1.prj",
+        "nameroot": "Corvara_IT_0_1",
+        "nameext": ".prj",
+        "class": "File",
+        "checksum": "sha1$86813d76269ab91b40ed3e67a86745bd933124e0",
+        "size": 145,
+        "http://commonwl.org/cwltool#generation": 0
+    },
+    {
+        "location": "file:///home/lolo/Desktop/7fox_nxp/Corvara_IT_0_1.shp",
+        "basename": "Corvara_IT_0_1.shp",
+        "nameroot": "Corvara_IT_0_1",
+        "nameext": ".shp",
+        "class": "File",
+        "checksum": "sha1$64882615a984a70bb61ba51e5e40916c61488225",
+        "size": 1252,
+        "http://commonwl.org/cwltool#generation": 0
+    },
+    {
+        "location": "file:///home/lolo/Desktop/7fox_nxp/Corvara_IT_0_1.shx",
+        "basename": "Corvara_IT_0_1.shx",
+        "nameroot": "Corvara_IT_0_1",
+        "nameext": ".shx",
+        "class": "File",
+        "checksum": "sha1$f1156483f3f06ab2c6bfb8367c7563465a09f544",
+        "size": 164,
+        "http://commonwl.org/cwltool#generation": 0
+    },
+    {
+        "location": "file:///home/lolo/Desktop/7fox_nxp/Corvara_IT_1_0.dbf",
+        "basename": "Corvara_IT_1_0.dbf",
+        "nameroot": "Corvara_IT_1_0",
+        "nameext": ".dbf",
+        "class": "File",
+        "checksum": "sha1$43e2f5f3472ffff82cc18ad25e645b8c6102e5c0",
+        "size": 2250,
+        "http://commonwl.org/cwltool#generation": 0
+    },
+    {
+        "location": "file:///home/lolo/Desktop/7fox_nxp/Corvara_IT_1_0.prj",
+        "basename": "Corvara_IT_1_0.prj",
+        "nameroot": "Corvara_IT_1_0",
+        "nameext": ".prj",
+        "class": "File",
+        "checksum": "sha1$86813d76269ab91b40ed3e67a86745bd933124e0",
+        "size": 145,
+        "http://commonwl.org/cwltool#generation": 0
+    },
+    {
+        "location": "file:///home/lolo/Desktop/7fox_nxp/Corvara_IT_1_0.shp",
+        "basename": "Corvara_IT_1_0.shp",
+        "nameroot": "Corvara_IT_1_0",
+        "nameext": ".shp",
+        "class": "File",
+        "checksum": "sha1$85423db183ff7b8770775a16e239c56765243b1d",
+        "size": 37404,
+        "http://commonwl.org/cwltool#generation": 0
+    },
+    {
+        "location": "file:///home/lolo/Desktop/7fox_nxp/Corvara_IT_1_0.shx",
+        "basename": "Corvara_IT_1_0.shx",
+        "nameroot": "Corvara_IT_1_0",
+        "nameext": ".shx",
+        "class": "File",
+        "checksum": "sha1$d5556b5acbf4acfbe0011a624c1d4f8376e1b7be",
+        "size": 1556,
+        "http://commonwl.org/cwltool#generation": 0
+    },
+    {
+        "location": "file:///home/lolo/Desktop/7fox_nxp/Corvara_IT_1_1.dbf",
+        "basename": "Corvara_IT_1_1.dbf",
+        "nameroot": "Corvara_IT_1_1",
+        "nameext": ".dbf",
+        "class": "File",
+        "checksum": "sha1$fe643687465fca1de606b1a17653efda404ed11f",
+        "size": 5298,
+        "http://commonwl.org/cwltool#generation": 0
+    },
+    {
+        "location": "file:///home/lolo/Desktop/7fox_nxp/Corvara_IT_1_1.prj",
+        "basename": "Corvara_IT_1_1.prj",
+        "nameroot": "Corvara_IT_1_1",
+        "nameext": ".prj",
+        "class": "File",
+        "checksum": "sha1$86813d76269ab91b40ed3e67a86745bd933124e0",
+        "size": 145,
+        "http://commonwl.org/cwltool#generation": 0
+    },
+    {
+        "location": "file:///home/lolo/Desktop/7fox_nxp/Corvara_IT_1_1.shp",
+        "basename": "Corvara_IT_1_1.shp",
+        "nameroot": "Corvara_IT_1_1",
+        "nameext": ".shp",
+        "class": "File",
+        "checksum": "sha1$a24980fd186a7867f198cf28aa4655302d1ff38e",
+        "size": 156868,
+        "http://commonwl.org/cwltool#generation": 0
+    },
+    {
+        "location": "file:///home/lolo/Desktop/7fox_nxp/Corvara_IT_1_1.shx",
+        "basename": "Corvara_IT_1_1.shx",
+        "nameroot": "Corvara_IT_1_1",
+        "nameext": ".shx",
+        "class": "File",
+        "checksum": "sha1$3d68759732b1853c420e398d698510ec727fa7ef",
+        "size": 3588,
+        "http://commonwl.org/cwltool#generation": 0
+    },
+    {
+        "location": "file:///home/lolo/Desktop/7fox_nxp/Corvara_IT_split_stderr.log",
+        "basename": "Corvara_IT_split_stderr.log",
+        "nameroot": "Corvara_IT_split_stderr",
+        "nameext": ".log",
+        "class": "File",
+        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
+        "size": 0,
+        "http://commonwl.org/cwltool#generation": 0
+    },
+    {
+        "location": "file:///home/lolo/Desktop/7fox_nxp/Corvara_IT_split_stdout.log",
+        "basename": "Corvara_IT_split_stdout.log",
+        "nameroot": "Corvara_IT_split_stdout",
+        "nameext": ".log",
+        "class": "File",
+        "checksum": "sha1$f69e6a6dce1d3ca99a37ce4e40f0c7379c8097c5",
+        "size": 24,
+        "http://commonwl.org/cwltool#generation": 0
+    }
+    ]
+}